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Table 4 Comparison between MAF in our data set and the data set from Lu et al. 2013 [15] Nat Genetics

From: Case-control association between CCT-associated variants and keratoconus in a Saudi Arabian population

SNP and MA

Data from the this study

Data from Lu et al. 2013 [15]

(108 cases/300 controls)

(652 cases/2,761 controls)

Lead SNP

Allele

MAF (cases)

MAF (controls)

OR

MAF (cases)

MAF (controls)

OR

p-value

rs7606754

A

0.34

0.37

0.9

0.37

0.33

1.2

6.0E-03

rs4894535a

T

0.16

0.12

1.4

0.21

0.16

1.5

1.3E-06

rs1324183

A

0.25

0.28

0.9

0.24

0.2

1.3

8.8E-05

rs1536482

A

0.45

0.41

1.1

0.4

0.34

1.3

1.2E-03

rs7044529a

T

0.14

0.13

1.1

0.18

0.14

1.3

3.0E-04

rs11145951a

T

0.44

0.49

0.82

0.45

0.49

0.89

0.03

rs2721051a

T

0.14

0.11

1.4

0.14

0.1

1.5

3.2E-06

rs9938149

C

0.29

0.32

0.9

0.32

0.36

1.2

7.1E-03

  1. SNP single nucleotide polymorphism; MA minor allele; MAF minor allele frequency; OR odds ratio
  2. a These SNPs had similar trends of allele frequency changes between cases and controls as those reported by Lu et al. [15]
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Journal of Negative Results in BioMedicine

ISSN: 1477-5751

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