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Table 2 Summary of the screened SNPs, assays ID and probe sequences utilized in the study

From: Case-control association between CCT-associated variants and keratoconus in a Saudi Arabian population

dbSNP

Gene symbol

NCBI assembly locationa

Assay ID

Context sequence [VIC/FAM]

rs7606754

COL4A3

chr2: 228135180

C__381076_10

AAATATACTTAGATCAAACTATTCA[A/G]AGAGGCTTGTTAAAATTTACCAATA

rs4894535

FNDC3B

chr3: 171995605

C__11808243_30

TTTTTTCCATTTTCCATAGTCCTTA[C/T]CCTTCCCTTTTGTTTTATATACCCA

rs1324183

MPDZ-NF1B

chr9: 13557491

C___7609107_10

GGTTTGTTTTTCACCCTATTCCTCC[A/C]ACTTCCTTCAAGGCCCCTTAGAACT

rs1536482

RXRA-COL5A1

chr9: 137440528

C___9201021_10

TAGGCTCCAACATGTAAATGCTGGG[A/G]GGACGCACACGTTCAAACCATAGCA

rs7044529

COL5A1

chr9: 137568051

C__29292365_20

TTTCCAGAAGTAACCCCTCAACTCT[C/T]TGATCGGTATTGTTCTGGACTTACT

rs11145951

LCN12-PTGDS

chr9: 139860264

C__31552589_20

AAGCTGCCAGTAGCTGCAGCTGGCC[C/T]GATGTGAGCCACAAAACCGGATGTG

rs2721051

FOXO1

chr13: 41110884

C__11302573_10

GAGCCAAATATCCTGCCAGCCAGCA[C/T]GGACCTGCTCCCAAGAATCATGTGT

rs9938149

BANP-ZNF49

chr16: 88331640

C__29917063_20

CTGCAATTGTCCCACAGGTCTTGTC[A/C]CCAGAAATCAAGTCCTTCTTCATCT

  1. SNP single nucleotide polymorphism; COL4A3 Collagen, type IV, alpha (Goodpasture antigen); FNDC3B fibronectin type III domain containing 3B; MPDZ multiple PDZ domain protein; NF1B neurofibromin 1b; COL5A1 collagen, type V, alpha 1; LCN12 lipocalin 12; PTGDS prostaglandin D2 synthase 21 kDa; FOXO1 forkhead box O1; BANP BTG3 associated nuclear protein; ZNF469 zinc finger protein 469
  2. aThe chromosomal location is based on UCSC GRCh37/hg19; chr, chromosome; Assays are supplied by Life technologies (Carlsbad, CA, USA)