From: Metallothionein genes: no association with Crohn's disease in a New Zealand population
SNP | Location | gene | Â | CASE | CONTROL | p | Â | CASE | CONTROL | p |
---|---|---|---|---|---|---|---|---|---|---|
rs182221 | 56, 599, 221 | MT4 | G/G | 262 (0.66) | 398 (0.64) | 0.87 | G | 646 (0.81) | 995 (0.80) | 0.72 |
 |  |  | C/G | 122 (0.31) | 199 (0.32) |  | C | 154 (0.19) | 247 (0.20) |  |
 |  |  | C/C | 16 (0.04) | 24 (0.04) |  |  |  |  |  |
rs666636 | 56, 601, 720 | MT4 | G/G | 386 (0.95) | 599 (0.95) | 0.70* | G | 791 (0.98) | 1229 (0.97) | 0.55 |
 |  |  | A/G | 19 (0.05) | 31 (0.05) |  | A | 19 (0.02) | 35 (0.03) |  |
 |  |  | A/A | 0 (0.00) | 2 (0.00) |  |  |  |  |  |
rs666647 | 56, 601, 722 | MT4 | C/C | 386 (0.95) | 605 (0.95) | 0.73* | C | 791 (0.98) | 1241 (0.97) | 0.58 |
 |  |  | C/T | 19 (0.05) | 31 (0.05) |  | T | 19 (0.02) | 35 (0.03) |  |
 |  |  | T/T | 0 (0.00) | 2 (0.00) |  |  |  |  |  |
rs669293 | 56, 602, 352 | MT4 | T/T | 293 (0.73) | 428 (0.67) | 0.16 | T | 686 (0.85) | 1039 (0.82) | 0.051 |
 |  |  | C/T | 100 (0.25) | 283 (0.29) |  | C | 120 (0.15) | 231 (0.18) |  |
 |  |  | C/C | 10 (0.02) | 24 (0.04) |  |  |  |  |  |
rs762604 | 56, 602, 671 | MT4 | C/C | 183 (0.45) | 302 (0.48) | 0.18 | C | 538 (0.67) | 878 (0.70) | 0.15 |
 |  |  | C/T | 172 (0.43) | 274 (0.44) |  | T | 268 (0.33) | 380 (0.30) |  |
 |  |  | T/T | 48 (0.12) | 53 (0.08) |  |  |  |  |  |
rs11643815 | 56, 602, 798 | MT4 | G/G | 307 (0.76) | 482 (0.76) | 0.53 | G | 700 (0.86) | 1102 (0.87) | 0.61 |
 |  |  | A/G | 86 (0.21) | 138 (0.22) |  | A | 110 (0.14) | 162 (0.13) |  |
 |  |  | A/A | 12 (0.03) | 12 (0.02) |  |  |  |  |  |
rs11644094 | 56, 624, 079 | MT3 | A/A | 134 (0.34) | 220 (0.35) | 0.90 | A | 460 (0.58) | 736 (0.58) | 0.79 |
 |  |  | A/G | 192 (0.48) | 295 (0.47) |  | G | 338 (0.42) | 527 (0.42) |  |
 |  |  | G/G | 73 (0.18) | 116 (0.18) |  |  |  |  |  |
rs10636 | 56, 643, 343 | MT2A | G/G | 228 (0.57) | 358 (0.57) | 0.66 | G | 598 (0.74) | 946 (0.75) | 0.67 |
 |  |  | C/G | 142 (0.35) | 230 (0.37) |  | C | 206 (0.26) | 312 (0.25) |  |
 |  |  | C/C | 32 (0.08) | 41 (0.07) |  |  |  |  |  |
rs2070836 | 56, 660, 120 | MT1E | G/G | 346 (0.85) | 530 (0.84) | 0.56 | G | 746 (0.92) | 1156 (0.92) | 0.69 |
 |  |  | C/G | 54 (0.13) | 96 (0.15) |  | C | 64 (0.08) | 106 (0.08) |  |
 |  |  | C/C | 5 (0.01) | 5 (0.01) |  |  |  |  |  |
rs708274 | 56, 660, 906 | MT1E | G/G | 310 (0.78) | 482 (0.77) | 0.22 | G | 701 (0.88) | 1100 (0.88) | 0.80 |
 |  |  | G/T | 81 (0.20) | 136 (0.22) |  | T | 95 (0.12) | 144 (0.12) |  |
 |  |  | T/T | 7 (0.02) | 4 (0.01) |  |  |  |  |  |
rs2270836 | 56, 667, 614 | MT1M | C/C | 169 (0.42) | 231 (0.37) | 0.19 | C | 516 (0.64) | 764 (0.61) | 0.083 |
 |  |  | C/T | 178 (0.44) | 302 (0.48) |  | T | 286 (0.36) | 498 (0.39) |  |
 |  |  | T/T | 54 (0.13) | 98 (0.16) |  |  |  |  |  |
rs9936741 | 56, 667, 785 | MT1M | T/T | 387 (0.96) | 610 (0.95) | 0.94* | T | 792 (0.98) | 1249 (0.98) | 0.94 |
 |  |  | C/T | 18 (0.04) | 29 (0.05) |  | C | 18 (0.02) | 29 (0.02) |  |
 |  |  | C/C | 0 (0.00) | 0 (0.00) |  |  |  |  |  |
rs7190725 | 56, 673, 290 | MT1A | G/G | 308 (0.76) | 483 (0.76) | 0.99 | G | 706 (0.87) | 1109 (0.87) | 0.94 |
 |  |  | G/T | 90 (0.22) | 143 (0.22) |  | T | 104 (0.13) | 165 (0.13) |  |
 |  |  | T/T | 7 (0.02) | 11 (0.02) |  |  |  |  |  |
rs964372 | 56, 686, 030 | MT1B | G/G | 317 (0.78) | 514 (0.81) | 0.65 | G | 714 (0.88) | 1142 (0.89) | 0.34 |
 |  |  | C/G | 80 (0.20) | 114 (0.18) |  | C | 96 (0.12) | 134 (0.11) |  |
 |  |  | C/C | 8 (0.02) | 10 (0.02) |  |  |  |  |  |
rs2070839 | 56, 686, 242 | MT1B | C/C | 152 (0.38) | 256 (0.40) | 0.17 | C | 503 (0.63) | 792 (0.62) | 0.89 |
 |  |  | C/T | 199 (0.50) | 280 (0.44) |  | T | 301 (0.37) | 480 (0.38) |  |
 |  |  | T/T | 51 (0.13) | 100 (0.16) |  |  |  |  |  |
rs2291956 | 56, 692, 218 | MT1F | C/C | 308 (0.76) | 481 (0.76) | 0.97 | C | 705(0.87) | 1104 (0.87) | 0.97 |
 |  |  | C/T | 89 (0.22) | 142 (0.22) |  | T | 103 (0.13) | 162 (0.13) |  |
 |  |  | T/T | 7 (0.02) | 10 (0.02) |  |  |  |  |  |
rs2298847 | 56, 701, 294 | MT1G | T/T | 310 (0.77) | 495 (0.79) | 0.28 | T | 709 (0.88) | 1107 (0.89) | 0.58 |
 |  |  | A/T | 89 (0.22) | 117 (0.19) |  | A | 99 (0.12) | 143 (0.11) |  |
 |  |  | A/A | 5 (0.01) | 13 (0.02) |  |  |  |  |  |
rs4784708 | 56, 703, 914 | MT1H | G/G | 376 (0.94) | 565 (0.89) | 0.0197* | G | 778 (0.97) | 1196 (0.94) | 0.016 |
 |  |  | C/G | 26 (0.06) | 66 (0.10) |  | C | 26 (0.03) | 70 (0.06) |  |
 |  |  | C/C | 0 (0.00) | 2 (0.00) |  |  |  |  |  |
rs2062545 | 56, 704, 125 | MT1H | A/A | 364 (0.90) | 580 (0.91) | 0.43* | A | 768 (0.95) | 1214 (0.96) | 0.42 |
 |  |  | A/G | 40 (0.10) | 54 (0.09) |  | G | 42 (0.05) | 56 (0.04) |  |
 |  |  | G/G | 1 (0.00) | 1 (0.00) |  |  |  |  |  |
rs2062546 | 56, 704, 217 | MT1H | T/T | 353 (0.87) | 566 (0.89) | 0.35* | T | 757 (0.94) | 1200 (0.95) | 0.36 |
 |  |  | A/T | 51 (0.13) | 68 (0.11) |  | A | 51 (0.06) | 68 (0.05) |  |
 |  |  | A/A | 0 (0.00) | 0 (0.00) |  |  |  |  |  |
rs2301234 | 56, 716, 982 | MT1X | G/G | 173 (0.43) | 248 (0.39) | 0.41 | G | 517 (0.64) | 791 (0.62) | 0.35 |
 |  |  | G/T | 171 (0.43) | 395 (0.46) |  | T | 287 (0.36) | 479 (0.38) |  |
 |  |  | T/T | 58 (0.14) | 92 (0.14) |  |  |  |  |  |