Exclusion of PINK1 as candidate gene for the late-onset form of Parkinson's disease in two European populations
© Schlitter et al; licensee BioMed Central Ltd. 2005
Received: 10 July 2005
Accepted: 14 December 2005
Published: 14 December 2005
Parkinson's disease (PD) is the second most common neurodegenerative disorder. Recently, mutations in the PINK1 (PARK6) gene were shown to rarely cause autosomal-recessively transmitted, early-onset parkinsonism. In order to evaluate whether PINK1 contributes to the risk of common late-onset PD we analysed PINK1 sequence variations. A German (85 patients) and a Norwegian cohort (90 patients) suffering from late-onset PD were screened for mutations and single nucleotide polymorphisms (SNPs) in the PINK1 gene. Both cohorts consist of well-characterized patients presenting a positive family history of PD in ~17%. Investigations were performed by single strand conformation polymorphism (SSCP), denaturating high performance liquid chromatography (DHPLC) and sequencing analyses. SNP frequencies were compared by the χ2 test
Several common SNPs were identified in our cohorts, including a recently identified coding variant (Q115L) in exon 1. Genotyping of the Q115L variation did not reveal significant frequency differences between patients and controls. Pathogenic mutations in the PINK1 gene were not identified, neither in the German nor in the Norwegian cohort.
Sequence variation in the PINK1 gene appears to play a marginal quantitative role in the pathogenesis of the late-onset form of PD, in German and Norwegian cohorts, if at all.
PD is the second most common neurodegenerative disorder after Alzheimer disease affecting more than 1% of the population by the age of 65 years. Mutations in the alpha-synuclein (PARK1), Parkin (PARK2) and DJ-1 (PARK7) gene cause fairly rare familial forms of PD characterized by an early age of onset. Mutations in the recently identified LRRK2 (PARK8) gene, especially the common mutation G2019S, occur more frequently in patients suffering from early as well as late-onset PD [1, 2]. Recently, mutations in the PINK1 (PARK6) gene were shown to cause autosomal recessively transmitted early-onset parkinsonism [3, 4]. The PINK1 (PTEN-induced kinase 1) gene encodes a putative protein kinase. The protein is targeted to mitochondria and shows a serine-threonine kinase domain with homology to kinases of the Ca2+/calmodulin family. It appears to exert protective effects against cellular stress within mitochondria. These findings link mitochondria directly to the pathogenesis of PD [3, 5]. An additional link between mitochondrial dysfunction and PD is obvious via the identification of disease causing mutations in the Omi/HtrA2 gene . The hypothesis of mitochondrial impairment was further emphasized by postmortem studies of PD brains  and observation of PD syndromes after intoxication with mitochondrial complex I inhibitors, such as MPTP (1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine) and rotenone . Mutations in the PINK1 gene are the second most common cause of autosomal-recessively inherited early-onset PD after mutations in the Parkin gene. On the other hand, strong evidence was reported for a possible role of Parkin gene variations in the late-onset form of PD (age of onset >45 years): Parkin mutations appear to contribute to the common late-onset form and mutations, especially in exon 7 in heterozygous state, may play a role as susceptibility alleles for sporadic PD[9, 10]. The question arises as to whether the PINK1 gene is also a candidate gene for late-onset forms of Parkinson's disease, similar to the suggested role of the Parkin gene.
Here we report of a population-based analysis of sequence variations within the PINK1 gene. The German cohort includes 85 patients suffering from late-onset form of PD and represents a modern urban population with a genetic heterogeneity. In contrast, the Norwegian cohort represents a more homogeneous population  and includes 90 patients suffering from late-onset form of PD.
Allelic frequencies of identified SNPs in Norwegian (NW) and German (G) patient cohorts
p-value *distribution is significant
Genotyping of the Q115L variation
(n = 90)
(n = 136)
(n = 85)
(n = 210)
As recently shown, mutations in the PINK1 gene rarely cause autosomal-recessively transmitted PD . Besides an early age of onset, the observed clinical symptoms in PD caused by PINK1 are similar to symptoms in idiopathic PD.
In this population-based study, we investigated whether sequence variations in the PINK1 gene play a role in the late-onset form of PD. A recently described variation (Q115L) of the PINK1 gene  was identified in the German and the Norwegian cohorts. We calculated allele frequencies in cases and controls and show here that the Q115L variant was not associated with late-onset PD in our study. These findings correspond to previously published data of no leading association of other coding SNPs within the PINK1 gene and PD . In addition, several common SNPs were identified. We did not find any pathogenic mutation of the PINK1 in our cohorts composed of patients suffering from late-onset form of PD. The risk to miss potential mutations was minimized by a well established and optimized SSCP analyses.
The most likely reason to explain the absence of mutations in our cohorts is the lack of influence of the PINK1 gene in the pathogenesis of late-onset PD. Individual tagging SNPs and tag-defined haplotypes in 500 PD patients likewise did not reveal associations with PD . Future investigations should include screening of potential promoter as well as enhancer/silencer regions of the gene to finally exclude any lack of influence of PINK1 variation on PD manifestation. Yet, functional investigations of the PINK1 protein are necessary to identify potential interaction partners as candidates for additional mutation screening.
Investigations of other genes involved in the mitochondrial pathway of the PINK1 gene are necessary to evaluate the exact role of mitochondrial impairment for common forms of PD.
Materials and methods
Patients and controls
The Norwegian cohort (n = 90) consists of patients suffering from late-onset PD (median age of onset 64.4 years, range from 49 to 78 years, standard deviation 7.9) originated from the Stavanger area of Western Norway. This population is known to be genetically quite homogeneous  and has previously been described in several clinical PD studies [15, 16]. 16.7% of the patients presented a positive family history for PD concerning first degree relatives (siblings or parents). All patients meet the criteria for PD [15, 17] and were thoroughly clinically examined. An ethnically matched control group of healthy blood donors was recruited in Bergen, Norway. The German cohort (n = 85) consists of patients of the Ruhr area suffering from late-onset PD (median age of onset 58.7 years, range from 45 to 79 years, standard deviation 8.7) diagnosed according to the UK Brain Bank criteria . 16.5% of the patients presented a positive family history for PD concerning first degree relatives (siblings or parents). Ethnically matched control samples from senior healthy blood donors (median age 57.2 years, range from 42 to 68 years, standard deviation 5.7) were recruited at the neighbouring University Hospital of Essen (Germany). Population stratification was excluded for the controls by multiple microsatellites analyses. After receiving informed consent from the patients, peripheral blood samples were taken and genomic DNA was extracted following standard protocols. German (Bochum and Düsseldorf) and Norwegian (Bergen) ethics committees approved this study.
SSCP, DHPLC, sequencing
Primers for PINK1 gene analysis
Product size (bp)
SNP frequencies were compared by the χ2 test. We considered P-values < 0.05 as significant.
We sincerely thank all the participants in this study. We also thank Dr. O.-B. Tysnes (Department of Neurology, Haukeland University Hospital, Bergen, Norway) for providing control samples. AMS gratefully acknowledges an Alma and Heinrich Vogelsang Foundation fellowship.
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